{"name":"napari-psfgenerator","display_name":"PSF Generator","visibility":"public","icon":"","categories":["Simulation"],"schema_version":"0.2.1","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-psfgenerator.get_reader","title":"Open data with PSF Generator","python_name":"napari_psfgenerator._reader:napari_get_reader","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-psfgenerator.write_multiple","title":"Save multi-layer data with PSF Generator","python_name":"napari_psfgenerator._writer:write_multiple","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-psfgenerator.write_single_image","title":"Save image data with PSF Generator","python_name":"napari_psfgenerator._writer:write_single_image","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-psfgenerator.make_sample_data","title":"Load sample data from PSF Generator","python_name":"napari_psfgenerator._sample_data:make_sample_data","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-psfgenerator.make_function_widget","title":"Make function widget","python_name":"napari_psfgenerator:propagators_container","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"napari-psfgenerator.get_reader","filename_patterns":["*.npy"],"accepts_directories":false}],"writers":[{"command":"napari-psfgenerator.write_multiple","layer_types":["image*","labels*"],"filename_extensions":[],"display_name":""},{"command":"napari-psfgenerator.write_single_image","layer_types":["image"],"filename_extensions":[".npy"],"display_name":""}],"widgets":[{"command":"napari-psfgenerator.make_function_widget","display_name":"Propagators","autogenerate":false}],"sample_data":[{"command":"napari-psfgenerator.make_sample_data","key":"unique_id.1","display_name":"PSF Generator"}],"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.4","name":"napari-psfgenerator","version":"0.4.1","dynamic":["license-file"],"platform":null,"supported_platform":null,"summary":"Plugin to compute the focal electric field","description":"# napari-psfgenerator\n\n[![MIT License](https://img.shields.io/github/license/Biomedical-Imaging-Group/napari-psfgenerator)](https://github.com/Biomedical-Imaging-Group/napari-psfgenerator/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-psfgenerator.svg?color=green)](https://pypi.org/project/napari-psfgenerator)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-psfgenerator.svg?color=green)](https://python.org)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-psfgenerator)](https://napari-hub.org/plugins/napari-psfgenerator)\n\n## PSF Generator Napari Plugin\n\nThe **PSF Generator Napari Plugin** provides an intuitive, interactive platform for simulating **Point Spread Functions (PSFs)** directly within the Napari ecosystem. Built on **PyTorch**, this plugin supports both **CPU and GPU-accelerated** computations, ensuring fast and efficient simulations for fundamental and advanced optical modeling.\n\n### Key Features:\n\n- **Flexible Propagation Models:** Scalar and vectorial propagators in Cartesian and spherical coordinates.\n- **Customizable Parameters:** Configure **physical** (e.g., numerical aperture, wavelength), **numerical** (e.g., pixel size, Z-stacks), and **optical settings** (e.g., Gibson-Lanni corrections, Zernike aberrations).\n- **Real-Time Visualization:** Seamless integration with Napari for immediate visual feedback.\n- **Versatile API:** Access propagators programmatically for custom workflows.\n- **Image Export:** Save computed PSFs in **TIFF format**.\n\nThis plugin is a powerful tool for researchers in **optics, computational microscopy, and imaging science**, bridging user-friendly interactivity with the computational capabilities of our Python library.\n\n----------------------------------\n\nThis [napari] plugin was generated with [copier] using the [napari-plugin-template].\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/napari-plugin-template#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/stable/plugins/index.html\n-->\n\n## Installation\n\nSet up a Python virtual environment and install napari following this [guide].\n\nYou can install `napari-psfgenerator` via [pip]:\n\n    pip install napari-psfgenerator\n\nTo install latest development version :\n\n    pip install git+https://github.com/Biomedical-Imaging-Group/napari-psfgenerator.git\n\n\nNow you can try the plugin out! Open napari, click on the menu \"Plugins\" and select \"Propagators (PSF Generator)\".\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [MIT] license,\n\"napari-psfgenerator\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[copier]: https://copier.readthedocs.io/en/stable/\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[napari-plugin-template]: https://github.com/napari/napari-plugin-template\n[guide]: https://napari.org/dev/tutorials/fundamentals/installation.html\n[file an issue]: https://github.com/VStergiop/napari-psfgenerator/issues\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n[psf_generator library]: https://github.com/Biomedical-Imaging-Group/psf_generator\n[plugin]: https://github.com/Biomedical-Imaging-Group/napari-psfgenerator\n","description_content_type":"text/markdown","keywords":null,"home_page":null,"download_url":null,"author":null,"author_email":"Vasiliki Stergiopoulou <vasiliki.stergiopoulou@epfl.ch>, Jonathan Dong <jonathan.dong@epfl.ch>, Yan Liu <yan.liu@epfl.ch>, Daniel Sage <daniel.sage@epfl.ch>","maintainer":null,"maintainer_email":null,"license":"The MIT License (MIT)\n\nCopyright (c) 2024 \n\nPermission is hereby granted, free of charge, to any person obtaining a copy\nof this software and associated documentation files (the \"Software\"), to deal\nin the Software without restriction, including without limitation the rights\nto use, copy, modify, merge, publish, distribute, sublicense, and/or sell\ncopies of the Software, and to permit persons to whom the Software is\nfurnished to do so, subject to the following conditions:\n\nThe above copyright notice and this permission notice shall be included in\nall copies or substantial portions of the Software.\n\nTHE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\nIMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\nFITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE\nAUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\nLIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,\nOUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN\nTHE SOFTWARE.\n","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: MIT License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.11","Programming Language :: Python :: 3.12","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["magicgui","qtpy","psf-generator","pyqt5","napari","napari; extra == \"napari\"","tox; extra == \"testing\"","pytest; extra == \"testing\"","pytest-cov; extra == \"testing\"","pytest-qt; extra == \"testing\"","napari; extra == \"testing\"","pyqt5; extra == \"testing\""],"requires_python":">=3.9","requires_external":null,"project_url":["Bug Tracker, https://github.com/VStergiop/napari-psfgenerator/issues","Documentation, https://github.com/VStergiop/napari-psfgenerator#README.md","Source Code, https://github.com/VStergiop/napari-psfgenerator","User Support, https://github.com/VStergiop/napari-psfgenerator/issues"],"provides_extra":["napari","testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}