{"name":"napari-opt-handler","display_name":"OPT Preprocessing","visibility":"public","icon":"","categories":["Image Processing","Transformations"],"schema_version":"0.2.1","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-opt-handler.make_sample_data","title":"Load sample data from OPT Preprocessing","python_name":"napari_opt_handler._sample_data:make_sample_data","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-opt-handler.make_qtwidget","title":"Make OPT handler widget","python_name":"napari_opt_handler._qtwidget:PreprocessingnWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-opt-handler.make_qtwidget","display_name":"OPT Preprocessing","autogenerate":false}],"sample_data":[{"command":"napari-opt-handler.make_sample_data","key":"unique_id.1","display_name":"OPT Preprocessing"}],"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-opt-handler","version":"0.0.3","dynamic":null,"platform":null,"supported_platform":null,"summary":"Optical Projection Tomography preprocessing plugin for napari","description":"# napari-opt-handler\n\n[![License BSD-3](https://img.shields.io/pypi/l/napari-opt-handler.svg?color=green)](https://raw.githubusercontent.com/QBioImaging/napari-opt-handler/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-opt-handler.svg?color=green)](https://pypi.org/project/napari-opt-handler)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-opt-handler.svg?color=green)](https://python.org)\n[![tests](https://github.com/QBioImaging/napari-opt-handler/workflows/tests/badge.svg)](https://github.com/QBioImaging/napari-opt-handler/actions)\n[![codecov](https://codecov.io/gh/QBioImaging/napari-opt-handler/branch/main/graph/badge.svg)](https://codecov.io/gh/QBioImaging/napari-opt-handler)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-opt-handler)](https://napari-hub.org/plugins/napari-opt-handler)\n\nOptical Projection Tomography preprocessing plugin for napari\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/stable/plugins/index.html\n-->\n\nplace for the gif\n<img src=\"\" width=\"700\"/>\n\nJump to:\n- [Usage](#usage)\n  - [Starting point](#starting-point)\n  - [Global settings](#settings)\n  - [Corrections](#corrections)\n  - [Other](#other)\n- [Installation](#installation)\n- [Troubleshooting installation](#troubleshooting-installation)\n- [Contributing](#contributing)\n- [License](#license)\n- [Acknowledgements](#acknowledgements)\n\n## 🛀 Usage\n\n### Starting point\n1. Data streamed from ImSwitch OPT widget (see details here[LINK])\n2. Loaded images as data stack\n3. Other stack 3D volume data formats\n\n### Global settings\nTracking\n\nInplace operations\n\n### Corrections\nDark-field correction\nBright-field correction\nBad-pixel correction\nIntensity correction\n\n### Other\nBinning\nROI\n-Log\n\n## 💻 Installation\n\nYou can install `napari-opt-handler` via [pip]:\n\n    pip install napari-opt-handler\n\n\n\nTo install latest development version :\n\n    pip install git+https://github.com/QBioImaging/napari-opt-handler.git\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## 🚓 License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-opt-handler\" is free and open source software\n\n## 🔨 Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n[file an issue]: https://github.com/QBioImaging/napari-opt-handler/issues\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":null,"download_url":null,"author":null,"author_email":"David Palecek <david@stanka.de>, Giorgia Tortora <giorgia.tortora@polimi.it>","maintainer":null,"maintainer_email":null,"license":"Copyright (c) 2024, David Palecek\nAll rights reserved.\n\nRedistribution and use in source and binary forms, with or without\nmodification, are permitted provided that the following conditions are met:\n\n* Redistributions of source code must retain the above copyright notice, this\n  list of conditions and the following disclaimer.\n\n* Redistributions in binary form must reproduce the above copyright notice,\n  this list of conditions and the following disclaimer in the documentation\n  and/or other materials provided with the distribution.\n\n* Neither the name of copyright holder nor the names of its\n  contributors may be used to endorse or promote products derived from\n  this software without specific prior written permission.\n\nTHIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS IS\"\nAND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE\nIMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE\nDISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE\nFOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL\nDAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR\nSERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER\nCAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,\nOR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\nOF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Science/Research","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.11","Programming Language :: Python :: 3.12","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["numpy","magicgui","scikit-image","matplotlib","magicgui ; extra == 'napari'","napari[pyqt5] ; extra == 'napari'","pooch >=1 ; extra == 'napari'","qtpy ; extra == 'napari'","pre-commit ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","pytest-mock ; extra == 'testing'","pytest-timeout ; extra == 'testing'","tox ; extra == 'testing'"],"requires_python":">=3.9","requires_external":null,"project_url":["Bug Tracker, https://github.com/QBioImaging/napari-opt-handler/issues","Documentation, https://github.com/QBioImaging/napari-opt-handler#README.md","Source Code, https://github.com/QBioImaging/napari-opt-handler","User Support, https://github.com/QBioImaging/napari-opt-handler/issues"],"provides_extra":["napari","testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}