{"name":"motile-plugin","display_name":"Motile","visibility":"public","icon":"","categories":["Utilities"],"schema_version":"0.2.1","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"motile-plugin.main_app","title":"Open the motile main application","python_name":"motile_plugin.application_menus.main_app:MainApp","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"motile-plugin.tree_widget","title":"Open the lineage view widget","python_name":"motile_plugin.data_views.views.tree_view.tree_widget:TreeWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"motile-plugin.menus_widget","title":"Open the motile menus widget","python_name":"motile_plugin.application_menus.menu_widget:MenuWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"motile-plugin.solve","title":"Run motile tracking (backend only)","python_name":"motile_plugin.motile.backend.solve:solve","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"motile-plugin.Fluo_N2DL_HeLa","title":"Load Fluo-N2DL-HeLa tracking dataset","python_name":"motile_plugin.example_data:Fluo_N2DL_HeLa","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"motile-plugin.Fluo_N2DL_HeLa_crop","title":"Load Fluo-N2DL-HeLa tracking dataset (crop)","python_name":"motile_plugin.example_data:Fluo_N2DL_HeLa_crop","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"motile-plugin.Mouse_Embryo_Membrane","title":"Load Mouse Embryo_Membrane tracking dataset","python_name":"motile_plugin.example_data:Mouse_Embryo_Membrane","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"motile-plugin.main_app","display_name":"Motile Main Widget","autogenerate":false},{"command":"motile-plugin.menus_widget","display_name":"Motile Menus Widget","autogenerate":false},{"command":"motile-plugin.tree_widget","display_name":"Motile Lineage View","autogenerate":false}],"sample_data":[{"command":"motile-plugin.Fluo_N2DL_HeLa","key":"Fluo-N2DL-HeLa","display_name":"Fluo-N2DL-HeLa (2D)"},{"command":"motile-plugin.Fluo_N2DL_HeLa_crop","key":"Fluo-N2DL-HeLa-crop","display_name":"Fluo-N2DL-HeLa crop (2D)"},{"command":"motile-plugin.Mouse_Embryo_Membrane","key":"Mouse_Embryo_Membrane","display_name":"Mouse Embryo Membranes (3D)"}],"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"motile-plugin","version":"2.0.1","dynamic":null,"platform":null,"supported_platform":null,"summary":"Tracking with motile","description":"# Motile Napari Plugin\n\n[![tests](https://github.com/funkelab/motile-napari-plugin/workflows/tests/badge.svg)](https://github.com/funkelab/motile-napari-plugin/actions)\n[![codecov](https://codecov.io/gh/funkelab/motile-napari-plugin/branch/main/graph/badge.svg)](https://codecov.io/gh/funkelab/motile-napari-plugin)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/motile-plugin)](https://napari-hub.org/plugins/motile-plugin)\n\nThe full documentation of the plugin can be found [here](https://funkelab.github.io/motile_napari_plugin/).\n\nA plugin for tracking with [motile](https://github.com/funkelab/motile) in napari.\nMotile is a library that makes it easy to solve tracking problems using optimization\nby framing the task as an Integer Linear Program (ILP).\nSee the motile [documentation](https://funkelab.github.io/motile)\nfor more details on the concepts and method.\n\n----------------------------------\n\n## Installation\n\nThis plugin depends on [motile](https://github.com/funkelab/motile), which in\nturn depends on gurobi and ilpy. These dependencies must be installed with\nconda before installing the plugin with pip.\n\n    conda create -n motile-plugin python=3.10\n    conda activate motile-plugin\n    conda install -c conda-forge -c funkelab -c gurobi ilpy\n    pip install motile-plugin\n\n## Issues\n\nIf you encounter any problems, please\n[file an issue](https://github.com/funkelab/motile-napari-plugin/issues)\nalong with a detailed description.\n","description_content_type":"text/markdown","keywords":null,"home_page":null,"download_url":null,"author":null,"author_email":"Caroline Malin-Mayor <malinmayorc@janelia.hhmi.org>","maintainer":null,"maintainer_email":null,"license":"BSD 3-Clause License","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.11","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["napari[all]","numpy","magicgui","qtpy","scikit-image","motile >=0.3","motile-toolbox >=0.3.5","pydantic","tifffile[all]","fonticon-fontawesome6","pyqtgraph","lxml-html-clean","myst-parser ; extra == 'docs'","sphinx ; extra == 'docs'","sphinx-autoapi ; extra == 'docs'","sphinx-rtd-theme ; extra == 'docs'","sphinxcontrib-video ; extra == 'docs'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'"],"requires_python":">=3.10","requires_external":null,"project_url":["Bug Tracker, https://github.com/funkelab/motile-napari-plugin/issues","Documentation, https://funkelab.github.io/motile_napari_plugin/"],"provides_extra":["docs","testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}