{"name":"brainglobe-segmentation","display_name":"brainglobe-segmentation","visibility":"public","icon":"","categories":[],"schema_version":"0.1.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"brainglobe-segmentation.SegmentationWidget","title":"Open segmentation widget","python_name":"brainglobe_segmentation.segment:SegmentationWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"brainglobe-segmentation.SegmentationWidget","display_name":"Region/track segmentation","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.4","name":"brainglobe-segmentation","version":"1.3.3","dynamic":["license-file"],"platform":null,"supported_platform":null,"summary":"Segmentation of anatomical structures in a common coordinate space","description":"[![Python Version](https://img.shields.io/pypi/pyversions/brainglobe-segmentation.svg)](https://pypi.org/project/brainglobe-segmentation)\n[![PyPI](https://img.shields.io/pypi/v/brainglobe-segmentation.svg)](https://pypi.org/project/brainglobe-segmentation)\n[![Wheel](https://img.shields.io/pypi/wheel/brainglobe-segmentation.svg)](https://pypi.org/project/brainglobe-segmentation)\n[![Development Status](https://img.shields.io/pypi/status/brainglobe-segmentation.svg)](https://github.com/brainglobe/brainglobe-segmentation)\n[![Tests](https://img.shields.io/github/actions/workflow/status/brainglobe/brainglobe-segmentation/test_and_deploy.yml?branch=main)](https://github.com/brainglobe/brainglobe-segmentation/actions)\n[![codecov](https://codecov.io/gh/brainglobe/brainglobe-segmentation/graph/badge.svg?token=WP9KTPZE5R)](https://codecov.io/gh/brainglobe/brainglobe-segmentation)\n[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/python/black)\n[![Twitter](https://img.shields.io/twitter/follow/brain_globe?style=social)](https://twitter.com/brain_globe)\n\n# brainglobe-segmentation\n\nSegmentation of anatomical structures in a common coordinate space\n\n## Installation\n**PyPI**\n```\npip install brainglobe-segmentation\n```\n\n**conda**\n```\nconda install -c conda-forge brainglobe-segmentation\n```\n\nN.B. Your data will need to be registered to an anatomical atlas first.\n\n## Usage\nSee [user guide](https://brainglobe.info/documentation/brainglobe-segmentation/index.html).\n\n## Seeking help or contributing\nWe are always happy to help users of our tools, and welcome any contributions. If you would like to get in contact with us for any reason, please see the [contact page of our website](https://brainglobe.info/contact.html).\n\n## Citing brainglobe-segmentation\n\nIf you find brainglobe-segmentation useful, and use it in your research, please let us know and also cite the paper:\n\n> Tyson, A. L., V&eacute;lez-Fort, M.,  Rousseau, C. V., Cossell, L., Tsitoura, C., Lenzi, S. C., Obenhaus, H. A., Claudi, F., Branco, T.,  Margrie, T. W. (2022). Accurate determination of marker location within whole-brain microscopy images. Scientific Reports, 12, 867 [doi.org/10.1038/s41598-021-04676-9](https://doi.org/10.1038/s41598-021-04676-9)\n","description_content_type":"text/markdown","keywords":null,"home_page":null,"download_url":null,"author":null,"author_email":"\"Adam Tyson, Horst Obenhaus\" <code@adamltyson.com>","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 4 - Beta","Framework :: napari","Intended Audience :: Developers","Intended Audience :: Science/Research","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.11","Programming Language :: Python :: 3.12","Programming Language :: Python :: 3.13"],"requires_dist":["brainglobe-atlasapi>=2.0.1","brainglobe-napari-io>=0.3.0","brainglobe-utils>=0.5.0","napari!=0.6.0,>=0.5","numpy","pandas[hdf5]","qtpy","scikit-image","scipy","tifffile","qt-niu","black; extra == \"dev\"","gitpython; extra == \"dev\"","pre-commit; extra == \"dev\"","pytest; extra == \"dev\"","coverage; extra == \"dev\"","pytest-cov; extra == \"dev\"","pytest-qt; extra == \"dev\"","napari-time-slicer; extra == \"dev\""],"requires_python":">=3.11","requires_external":null,"project_url":["Homepage, https://brainglobe.info/","Source Code, https://github.com/brainglobe/brainglobe-segmentation","Bug Tracker, https://github.com/brainglobe/brainglobe-segmentation/issues","Documentation, https://brainglobe.info/documentation/brainglobe-segmentation/index.html","User Support, https://forum.image.sc/tag/brainglobe"],"provides_extra":["dev"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}